Privacy-Preserving Genotype Imputation in a Trusted Execution Environment
Natnatee Dokmai, Can Kockan, Kaiyuan Zhu, Xiaofeng Wang, S. Cenk Sahinalp* and Hyunghoon Cho*
Cell Systems, 2021 [Link]
Also appeared in RECOMB, 2021
Sketching Algorithms for Genomic Data Analysis and Querying in a Secure Enclave
Can Kockan, Kaiyuan Zhu, Natnatee Dokmai, Nikolai Karpov, M. Oguzhan Kulekci, David P. Woodruff, S. Cenk Sahinalp
Nature Methods, 2020 [Link]
Also appeared in RECOMB, 2019
Structural Variation and Fusion Detection Using Targeted Sequencing Data from Circulating Cell Free DNA
Alexander R Gawroński, Yen-Yi Lin, Brian McConeghy, Stephane LeBihan, Hossein Asghari, Can Koçkan, Baraa Orabi, Nabil Adra, Roberto Pili, Colin C Collins, S Cenk Sahinalp, Faraz Hach
Nucleic Acids Research, 2019 [Link]
Toolkit for Automated and Rapid Discovery of Structural Variants
Arda Soylev, Can Kockan, Fereydoun Hormozdiari, Can Alkan
Methods, 2017 [Link]
SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA
Can Kockan, Faraz Hach, Iman Sarrafi, Robert H Bell, Brian McConeghy, Kevin Beja, Anne Haegert, Alexander W Wyatt, Stanislav V Volik, Kim N Chi, Colin C Collins, S Cenk Sahinalp
Bioinformatics, 2017 [Link]